The impact of special issues

With support from many authors from many different scientific fields,Zoological Research(ZR)successfully released eight special issues from 2011 to 2014 on various topics,including Animal Ecology and Resources,Animal Genetic Diversity,Development and Evolution,Fish Diversity and Primates and Animal Models of Human Diseases.These special issues strongly align with our aims and scope,which have been     

基于4种生态位模型的金钱松潜在适生区预测

金钱松（Pseudolarix amabilis）是我国特有孑遗植物，为国家II级保护植物。基于4种生态位模型（GARP、Bioclim、Domain和Maxent）预测金钱松潜在适生区，采用受试者工作特征曲线（Receiver Operating Characteristic，ROC）和Kappa统计量检验模型的预测效果。预测结果表明金钱松在浙江西北部、安徽南部、湖北南部、湖南北部以及江西北部表现为高度适生，并以这些地带为中心向外延伸至北纬24.43°-33.35°和东经106.41°-123.42°之间，4种模型预测结果的受试者工作特征曲线下面积（Area under recriver operating characteristic curve，AUC）平均值均大于0.9，Kappa平均值亦大于0.75，精度较高。通过"刀切法"分析得出年均温是预测金钱松潜在适生区的关键影响因子，可能为当前金钱松分布格局形成的决定因素。模拟金钱松在末次盛冰期和2070年气候条件下的分布，结果表明其分布格局随气候变化由"南扩北缩"变为"南缩北扩"，未来分布面积将大幅减小，气候变化是导致其"南缩北扩"的主要驱动因子。建议在当前金钱松高适分布区域内（江西铜鼓县、湖南张家界和衡阳）建立自然保护区或种子园，并在未来气候条件下高适分布区域内（如安徽北部、河南南部、湖北东南部等地）通过人工引种辅助金钱松的北向迁移。     

内蒙古大青山华北落叶松人工林乔木层碳密度年增量与气象因子的关系

以内蒙古大青山华北落叶松人工林为研究对象，通过树木年轮法和异速生长方程法，计算华北落叶松人工林生物量、碳密度及其年增量的年际变化，并分析碳密度年增量与气温、降水、湿度等气象因子的关系。研究发现：华北落叶松人工林碳密度随着林龄增加的变化曲线可用逻辑斯谛生长方程拟合，在1979—2016年，碳密度由1.05 t/hm~2增加到76.83 t/hm~2。华北落叶松人工林碳密度年增量存在显著的年际差异，总体上呈波动性的“慢-快-慢”趋势，碳密度年增量最高达到3.72 t hm^-2 a^-1,多年平均为2.05 t hm^-2 a^-1。华北落叶松人工林碳密度年增量与上年6月和当年6—8月的降水量显著正相关，与上年11月降水显著负相关；与上年11—12月、当年2月和12月的温度和大气相对湿度分别呈正、负相关；与上年7月、9月及当年8—9月的温度保持显著或极显著正相关。研究表明，温度、湿度和降水主要通过生长季的长短和土壤可利用水分及冬季的雪害冻害影响华北落叶松人工林的碳汇潜力，在未来该地区升温增湿的气候变化趋势下华北...     

接种丛枝菌根真菌对云南石漠化土壤呼吸的影响

为探明"丛枝菌根（Arbuscular mycorrhiza，AM）真菌-植物-土壤"耦合作用对石漠化土壤呼吸季节动态的影响，采用LI-6400-09土壤呼吸室和便携式光合作用测量系统，对圆柏（Sabina chinensis）接种摩西斗管囊霉（Funneliformis mosseae，FM）、根内根孢囊霉（Rhizophagus intraradices，RI）2种AM菌种处理下土壤呼吸季节动态进行野外连续定位观测，并探究AM真菌接种处理下石漠化土壤呼吸速率与植物生长、土壤理化性质之间的关系。结果表明：（1）相较于对照，接种AM真菌对石漠化生境土壤呼吸季节动态产生了显著影响（P<0.01）。AM真菌处理具有较高的土壤呼吸季节变化幅度，即根内根孢囊霉处理土壤呼吸速率（1.55-9.10 μmol m^-2 s^-1）显著高于摩西斗管囊霉（1.62-8.29 μmol m^-2 s^-1）和对照（1.23-4.46 μmol m^-2 s^-1）；（2） AM真菌接种处理下土壤温湿度变化对土壤呼吸的影响显著大于对照，即土壤温度与水分对土壤呼吸的平均解释量大小顺序为：RI （44.84%；52.35%）>FM （17.18%；41.65%）>CK （2.66%；16.55%）；（3）2种菌种处理下土壤呼吸速率均与土壤有机质、硝态氮、全氮、速效钾、树高、胸径及根系生物量呈显著或极显著正相关（P<0.01或0.05），而与pH呈极显著负相关（P<0.01），但对照处理土壤呼吸速率除与pH呈显著负相关（P<0.05）外，与其它土壤理化指标相关性不显著；（4）土壤温度和水分、硝态氮、铵态氮、有机质、易氧化有机碳、速效钾、全氮及全磷对土壤呼吸变化的贡献最大，而胸径、树高、有效磷、微生物生物量、根系生物量及pH的影响次之。因此，"AM真菌-寄主植物-土壤"相互作用对石漠化生境土壤呼吸季节动态的影响，主要取决于不同AM真菌接种处理对土壤微气候（如含水量）、碳素（有机质、易氧化有机碳）、无机氮库（铵态氮、硝态氮）、根系生物量及磷钾养分可利用性的调控。     

Assessing the contribution of tumor mutational phenotypes to cancer progression risk

Cancer occurs via an accumulation of somatic genomic alterations in a process of clonal evolution. There has been intensive study of potential causal mutations driving cancer development and progression. However, much recent evidence suggests that tumor evolution is normally driven by a variety of mechanisms of somatic hypermutability, which act in different combinations or degrees in different cancers. These variations in mutability phenotypes are predictive of progression outcomes independent of the specific mutations they have produced to date. Here we explore the question of how and to what degree these differences in mutational phenotypes act in a cancer to predict its future progression. We develop a computational paradigm using evolutionary tree inference (tumor phylogeny) algorithms to derive features quantifying single-tumor mutational phenotypes, followed by a machine learning framework to identify key features predictive of progression. Analyses of breast invasive carcinoma and lung carcinoma demonstrate that a large fraction of the risk of future clinical outcomes of cancer progression—overall survival and disease-free survival—can be explained solely from mutational phenotype features derived from the phylogenetic analysis. We further show that mutational phenotypes have additional predictive power even after accounting for traditional clinical and driver gene-centric genomic predictors of progression. These results confirm the importance of mutational phenotypes in contributing to cancer progression risk and suggest strategies for enhancing the predictive power of conventional clinical data or driver-centric biomarkers.     

大型煤电基地开发生态累积效应及定量分析方法研究

大型煤电基地(CEBs)是我国煤基能源和材料集中开发区域和国家能源战略安全重要支撑，合理评价CEBs开发生态影响是CEBs可持续协调开发、科学管理中的难点问题。研究将CEBs开发视为系统工程，与自然生态系统(NES)相关联，深入研究大型煤电基地生态系统(CEBES)的驱动行为、内在结构及主要关系、生态影响途径、生态累积过程和生态累积效应及阈值分析方法。基于CEBs空间和功能定位提出CEBs的概念、内涵和特点，融合构建的CEBES涵盖到自然资源、能源开发行为(煤、电等)、其他人类活动(农、牧、城)和大气、水、土壤及生物域；研究表明CEBES的生态累积状态受三种行为驱动和影响(自然行为、能源开发行为和其他人类活动),通过融合、传导和辐射耦合作用，表现为生态要素损伤、系统结构变化和系统状态失衡三级状态，生态累积具有影响多态性、空间多尺度和过程渐变性特点；明确了生态累积过程、累积效应和阈值及其相互关系，引入反映生态影响累积程度的生态损伤系数，提出四类生态阈值(生态要素、内部结构、系统状态和行为调控);基于系统性和实用性筛选反映生态累积相对状态的60项指标，构建具有“三力”驱动、分区要素耦合和系...     

Tyrosinase inhibitory effects and inhibition mechanisms of nobiletin and hesperidin from citrus peel crude extracts

The inhibitory effects of nobiletin and hesperidin from citrus peel crude extracts on tyrosinase diphenolase activity are evaluated. IC₅₀ of nobiletin and hesperidin is 1.49 mM and 16.08 mM, respectively and their inhibition mechanism is competitive type with K_i = 2.82 mM and noncompetitive with K_i = 9.16 mM, respectively. Crude extracts from citrus peel (C. unshiu Marc.) were extracted with 95% ethanol and fractionated by petroleum ether (PCPE). The ethanol phase (ECPE) was further desorbed from macroporous adsorption resin (FGRE). Their IC₅₀ values were 8.09 mg/mL, 7.53 mg/mL and 4.80 mg/mL, respectively. Their inhibition on melanogenesis in B16 mouse melanoma cells was also evaluated. FGRE showed a significant inhibition (42.5% at 31.25 μg/mL, p < 0.01) while hesperidin showed almost no inhibition. Nobiletin and PCPE give efficacious antiproliferation effects on B16 mouse melanoma cell with IC₅₀ values 88.6 μM and 62.96 μg/mL, respectively, by the MTT test. Hesperidin and other crude extracts showed very low cytotoxity to the B16 cell.     

Nitric oxide regulates ganoderic acid biosynthesis by the S-nitrosylation of aconitase under heat stress in Ganoderma lucidum

Nitric oxide (NO) is an important signalling molecule in stress response of organisms. We previously reported that NO decreases heat stress (HS)-induced ganoderic acid (GA) accumulation in Ganoderma lucidum. To explore the mechanisms by which NO modulates GA biosynthesis under HS, the effect of NO on the reactive oxygen species (ROS) content was examined. The results showed that NO decreased the production of mitochondrial ROS (mitROS) by 60% under HS. Further research revealed that NO reduced the mitROS content by inhibiting aconitase (Acon) activity. The GA content in Acon-silenced (Aconi) strains treated with NO donor did not differ significantly from that in untreated Aconi strains. To study the mechanism by which Acon activity is inhibited, the S-nitrosylation level of Acon was determined. Biotin-switch technology and mass spectrometry analysis were used to show that Acon is S-nitrosylated at the Cys-594 amino acid residue. Substitution of Cys-594 with a Ser, which cannot be S-nitrosylated, abolished the responsiveness of Acon to the NO-induced reduction in its enzymatic activity. These findings demonstrate that NO inhibits Acon activity through S-nitrosylation at Cys-594. In summary, these findings describe mechanism by which NO regulates GA biosynthesis via S-nitrosylation of Acon under HS condition in G. lucidum.